rs47244677 SNP Detail

Summary

• ID
  rs47244677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180535958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGACCCCA CGCAAGCCGC
  AGCCCGGCCC CGACCCGGTC CAGCCGCTCG CCGCCCGCCG CAGCCCTGAG GGCCCCTCTG
  CGTGTTCACA GCGGACCTTG ATTTAATGTC TATACAATTA AGGCACGCGG TGAATGCCAA
  GAGAGGCGCC TCCGCCGCTC CTTTCTCATG GAAATGGCCC GGGAGCCCGG CCGTCGCGGC
  R
  CCCCTCCCGC GGGAAAAAGG CGAGCCCCGG CCCCCGGTGG CCCCTCGCTC CGCGGACAAA
  TCCGGCGAAC AATGCGCCCG CCCAGAGGGC GGCCCAGCTG CTGGGCCGGG GATCTGGCCG
  CGGGACACAA AGGGGCCCGC ATGCCTAGGA CGTCACGAGA AGGGTGGGGG CGACCGCGGG
  GGAGAATGTG GCCACCCGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148394569	ENSMUSSNP4411738	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320632536	CHEV_2_180628870	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47244677					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180535958 () rs orientation: forward

Symbol	Name	Function Class
2810461L16Rik	RIKEN cDNA 2810461L16 gene	within coordinates
Cpgi12908	CpG island 12908	within coordinates
Gm27032	predicted gene, 27032	mRNA-UTR
Gm57443	predicted gene, 57443	1208 bp upstream
Mir124a-3	microRNA 124a-3	58 bp downstream
Rr572877	regulatory region 572877	1398 bp distal
Rr572878	regulatory region 572878	1219 bp distal
Rr572879	regulatory region 572879	1078 bp distal
Rr572880	regulatory region 572880	1098 bp distal
Rr572881	regulatory region 572881	753 bp distal
Rr572882	regulatory region 572882	50 bp distal
Rr572883	regulatory region 572883	858 bp proximal
Tssr22278	transcription start site region 22278	1027 bp downstream
Tssr28138	transcription start site region 28138	1226 bp upstream
Tssr28139	transcription start site region 28139	761 bp upstream
Tssr28140	transcription start site region 28140	743 bp upstream