rs47230866 SNP Detail

Summary

• ID
  rs47230866
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:52205612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAAACAT GATCCTAAAG
  TATACAGGTT TTTATTTCTG CTTTCTTTTG GATGAGTTGT ATACACATCT AGAAATAATA
  AATGGATGCA ACCACACAAC ACCTCATGCT CAACTGAGAA TCTTCCAAAA ACGTTGGTCT
  TTGAAATAAG CCCAGTACCC GGATGCAGAA AATGGCAGAG AAGAGTTGGA GGGAGCCTGG
  W
  GTACTGGTCA CTCAGATAAC AGGTTGTTGG CTGAGCAACG AAAACAATTC CCGGGCATCA
  GCCTGAGCCG GGAAGGGAAA CAGAGTTCTG TGGTCTCAGG CAGTGCCTGT GTTGTTGGGG
  GTGGGGAGAG GGTGGTTTGT TTCAGGTTTC TGTATTAAGA GTCGTTAGGC TGGTTTTCTT
  AGATTACAAT TTAGTACCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60886883	NES15969976	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47230866					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886883	NES15969976	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52205612 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52902	predicted gene, 52902			1277 bp upstream
Gm57855	predicted gene, 57855			Intron
				Noncoding-Transcript-Variant
Gm68361	predicted gene, 68361			451 bp downstream
Mir196b	microRNA 196b			1449 bp downstream
Rr630377	regulatory region 630377			1953 bp distal
Rr630378	regulatory region 630378			1431 bp distal
Rr630379	regulatory region 630379			1273 bp distal
Rr630380	regulatory region 630380			772 bp distal
Rr630381	regulatory region 630381			787 bp proximal
Rr630382	regulatory region 630382			1288 bp proximal
Tssr56513	transcription start site region 56513			1263 bp upstream
Tssr56514	transcription start site region 56514			1339 bp upstream
Tssr56515	transcription start site region 56515			1377 bp upstream
Tssr61013	transcription start site region 61013			1448 bp downstream
Tssr61014	transcription start site region 61014			1893 bp downstream
Tssr61015	transcription start site region 61015			1923 bp downstream