rs47228177 SNP Detail

Summary

• ID
  rs47228177
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121085002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCAGGGC TATGTCTTCC
  TCCCTTGCTA CCTGAAGCCA AGGGGTTTCC AATCCTCCCA GGAATATGAC ATAGCTTGAA
  GTGATCCGGA TTCTGGTTAT AGTTTGAGAT CTGTGAAACT GTCTAGAAAA CATAAATGTC
  AGGAAAGGGC GGATTTGAAT GTTTTCCCCC TAAGAGTATG CCTCTGACTG GCAAAAATTT
  K
  CTAGTTCGGT TTGTCTTGGA ACCCGTAAGG AAGAAAGGAA GTAGTGATGT ATGCCAGGAG
  CCTCAGGCAA AACCTGGCAG GACAGGAGCA GCTACTAACC CGGGGCTTCG TGGTCCTTCT
  ACCATACATG TAGTTTGACC TCGCCACTGG CAGAAATCAA ACTTCTCCAG CACTTAACTT
  TCCAACTACA CAACTGCAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss60440893	NES15940984	PERLEGEN	MM_PANEL2	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs47228177					SNP	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60440893	NES15940984	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121085002 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	420 bp upstream
Cpgi13756	CpG island 13756	129 bp proximal
Gm56787	predicted gene, 56787	within coordinates
Rr367543	regulatory region 367543	185 bp upstream
Rr375663	regulatory region 375663	1076 bp downstream
Rr584038	regulatory region 584038	within coordinates
Rr584039	regulatory region 584039	270 bp proximal
Rr584040	regulatory region 584040	478 bp proximal
Tssr31434	transcription start site region 31434	372 bp upstream
Tssr31435	transcription start site region 31435	468 bp upstream
Tssr31436	transcription start site region 31436	498 bp upstream
Tssr35412	transcription start site region 35412	245 bp downstream