rs47227965 SNP Detail

Summary

• ID
  rs47227965
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85341058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTGGTTT TTGGAACCGA
  GTCTTGCTCT GTAGCACAGG CTGGCCGAGA CCTCTCAGCA ATCCTCCTCC TTTAGCCTCT
  TAAAGTGCTA GATTACAGGT GTGAGCCGCC ATGCCTGTCT GGAGACCATG GCTTTACCAT
  GAAGCCTGAA ATGCATTATA GGGTATGGCT CAAGGGCAGA ACTGAAGGAC ACTGAGATAT
  S
  GAGAGAGGAG CTGATGGAAG GGAAACAGAG AGGAATCAGG GAGGCTGGCA TGGAGCCAGC
  ACAAGCGGGG CAAGTCCCAG CAAAGCTGGC TCCCAAACTC CTTATACTTT AACAGCAATT
  CTGATCATAA ATTAATAAAC AAACTTTTCT CAAGTAGCAG TAGTTAATAG GCTAAACACA
  GAAGTTTAAA AACATAATCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906859	NES15949984	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47227965					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906859	NES15949984	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85341058 () rs orientation: forward

Symbol	Name	Function Class
Rab11fip5	RAB11 family interacting protein 5 (class I)	Intron
Rr633187	regulatory region 633187	323 bp distal
Rr633188	regulatory region 633188	within coordinates
Rr633189	regulatory region 633189	1755 bp proximal