rs47206156 SNP Detail

Summary

• ID
  rs47206156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90519063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACAGCG ACCAGGAGAT
  TGACTTCAAG GAGTACTCTG TGTTCCTGAC CACGCTGTGC ATGGCCTACA ATGACTTCTT
  CCTAGAGGAC AACAAATGAC CAGGACACTG GCAGCTCCTG ATCCTGACCT CTGCAGCCTC
  TTTAACTGCC CCTCCTATGG CCCCTGCCCT TCTCTTTCTC CCAGATGGAT CCTTCCAGCA
  R
  AGAAATAAAG CCTTATCCAT TACACGCACT GGTTTTAAGG TGGTTTGTGT CTTGGCTGAG
  GCAGGGGAGA ACAGACATTT TGGACCACTA AGCCTTGGGC CACACACAGG TGGTCTGTGG
  ATAGCAGGAG CTGGGCTCTC ATCCCTCTTC ACTGGCAGTC CTTCATCATG GACATTGTTG
  GAGGTGTCCT GACTTTGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424285	NES15923532	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47206156					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424285	NES15923532	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90519063 () rs orientation: forward

Symbol	Name	Function Class
Gm57853	predicted gene, 57853	1428 bp upstream
Rr580416	regulatory region 580416	364 bp proximal
Rr580417	regulatory region 580417	921 bp proximal
Rr580418	regulatory region 580418	1032 bp proximal
S100a5	S100 calcium binding protein A5	mRNA-UTR
S100a6	S100 calcium binding protein A6 (calcyclin)	1126 bp upstream
Tssr30242	transcription start site region 30242	516 bp upstream
Tssr30243	transcription start site region 30243	1076 bp upstream
Tssr30244	transcription start site region 30244	1113 bp upstream
Tssr30245	transcription start site region 30245	1144 bp upstream
Tssr30246	transcription start site region 30246	1390 bp upstream
Tssr30247	transcription start site region 30247	1420 bp upstream
Tssr30248	transcription start site region 30248	1526 bp upstream
Tssr30249	transcription start site region 30249	1763 bp upstream
Tssr30250	transcription start site region 30250	1972 bp upstream