rs47194800 SNP Detail

Summary

• ID
  rs47194800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17107289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCACTAA GAATAATTAC
  ATGTATCTAT CATGGAACAA ATGAAATGTG GGGATGGTGT AGATCCACCA GGCCTGGATC
  TCCCCTCAGT AGTTAGTTTG CCCTTGCAGT ATAAGATTGT GGCCTCCTTG TCTAAGAGGT
  GCTCAAGATA CCTGGACATG TTTGTTGTTA GTTGATGCCC ATGTTTGCTT CTGTTGCTAT
  R
  ATAAACACCA TTACCATAAA CAGTTTCAGA GGGCATTTGG CTTACAGATT AGAATCCCTT
  ATTGAGGGAA ACTCAGAAAG GATCCTAGAG CCAGAAACTG AAACAGACTT TGGAGAAATG
  TTTCTACCAT CTTGTTCCTT TTGCCTTTCT TACACAACTC AGGCACATTT GCCTAGGAAT
  GATACCGCCC ACAGTGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133009937	ENSMUSSNP2041799	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47194800					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17107289 () rs orientation: forward

Symbol	Name	Function Class
Gm4876	predicted gene 4876	within coordinates
Gm53251	predicted gene, 53251	within coordinates
Rr626764	regulatory region 626764	1239 bp distal
Rr626765	regulatory region 626765	1386 bp distal
Rr626766	regulatory region 626766	1811 bp proximal
Tes	testin LIM domain protein	1465 bp downstream
Tssr55025	transcription start site region 55025	1913 bp downstream