rs47176975 SNP Detail

Summary

• ID
  rs47176975
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52165800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACACCCAT CGCCCTACAT
  GGGATGTTTG CCAGCAATTC TGATTCTGTT TTCTTTGGCT CGTAGGGAAC TTAGTAGGAC
  AGAGGCAAGA AAGGGTTTTT GGCCTCAGCC ACCGGTACAG TGGCTAAAAG CTACTGTCTT
  TTGAAGCAAC TTTCTCACCC AAACACCCCG ATTGGGACCC CAGCATGCAC ACAGGTTCTC
  M
  GACCCTGGAC ACTTTTCACC TGTACCTTAT AAGTGGAAAT CGGGGTGCCC CTCGAAAAAC
  CATTAATTTG TGTACGACTT CTGAAGTTCC TTAAGGGCGG TTCTAAAGCG ATGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAACCCCTTA AAATTGTATA CCTCTATTGA
  CCCACTGGCT CCGGAAAATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60410288	NES15916429	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47176975					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410288	NES15916429	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52165800 () rs orientation: forward

Symbol	Name	Function Class
Gm30125	predicted gene, 30125	1883 bp downstream
Gm38132	predicted gene, 38132	1870 bp downstream
Gm66188	predicted gene, 66188	1967 bp upstream
Rr576482	regulatory region 576482	within coordinates
Rr576483	regulatory region 576483	526 bp distal
Rr576484	regulatory region 576484	248 bp proximal