rs47170580 SNP Detail

Summary

• ID
  rs47170580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:21495146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTCT CTCTCTCTCT
  CAAGTATTCC TTACAGGATA CCAGGGACTT CTAAACCTAA GGAGATGTAC TCTTAATTAG
  CTAGGATATT ATTATAGCGG TGTCTGTTAG GAGAAGCTAG ATAGCAGTAT GCTTTTTCTA
  AGTTCATTGT CTTTATACAG CAAGCATTCA TTCTCCTGTG TTCGTGCCTC ATGCACATCA
  R
  CAGCAAACTC TGCTCAGCCT CTCAGGGCCC CAGAGTCAAA AGGAAACTTA GTGAAGTGTG
  TGCTAGCTTG AACACTGCCA GGCATTGCAC ATGCGCTGTC TCTTCACATC TACGCCATTG
  TCAAAAGCAA GTGACCACAC TTTGGTTTAA AAGTAAAGGG GTGTGGCAGC TGACTTCTAG
  GATGTGTCCA GAGGAGCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61258600	NES16881792	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47170580					SNP	G	G	A	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61258600	NES16881792	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:21495146 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700020N01Rik	RIKEN cDNA 1700020N01 gene			Intron
				Noncoding-Transcript-Variant
Rr1737	regulatory region 1737			1454 bp upstream
Rr428751	regulatory region 428751			226 bp distal
Rr428752	regulatory region 428752			518 bp proximal