rs47164161 SNP Detail

Summary

• ID
  rs47164161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:101042175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTACTT TGCATAATTT
  TGTATCACTT TTCTATTCCA TCTTGTTTGA GTGTGTATGT GCATGTGCAT GTGTGGAGGT
  TAGGGACAGC TTGTGGGAGT TGTGTTTTTC CTCCTCCTAT CAGGTGGGTT CTGGGGGGCA
  CCCTGGAGTG AGTGCTCAGA CTGTAGGCTC ATTTACATGC AGAGGCATCT CATTGGCCCC
  Y
  GAATATCATG AGATGCAGGT GACCTGTGAG CGTGATAGAG TCTGGTTTTC TCTTTTGCTA
  GAATCAGGGA GACTTCAAAT CTCATCCCCA TGGGTCCATG ACTCTCTTCC TTCAATGAAA
  GCAAGAATTC TCTCCTGAGA CAGGTCATGC TGAAGGCTGC CTAAGGGTCT AAAGACTGTG
  TGTGATAAGG TGACAGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133429427	ENSMUSSNP1571135	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47164161					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:101042175 () rs orientation: forward

Symbol	Name	Function Class
Gm43948	predicted gene, 43948	within coordinates
Gm43950	predicted gene, 43950	within coordinates
Rr635751	regulatory region 635751	1139 bp distal