rs47151739 SNP Detail

Summary

• ID
  rs47151739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84247209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAAACTT GGGGCTCATG
  TTTACAGCAG TAGCACTTAC CCACCCCGAC TAAACCATTT CCCCAGACCA AGACTCTTGG
  GTTTTAGACA CATTTCCTGT CTCTTCCTGT CTTCTTGCTG TTTTCCAGAT GGTTCCTAGC
  TCCAAACTTT CACTACAGTT CAGATTCTTA CTGCTTCTGT TTTGTCTTGC CCATGACATC
  Y
  TTCCTACCAA CTTTCTGCCT GCATCTCAGC CTTCATCCCC TGGACAACTC CTTCTTCATC
  CTCCGGAACT CACTCCTCTA GCAAACATTG ACAACTGCAG GACAAGGTAC CAAGCACGTA
  TCGGGGGCTT GTAAGGGAAA GTACACAATG ATCAGGTGCT GGTAGGAATT TAACTGATTC
  AGGCTCAGTT CCACGTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904625	NES15950354	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47151739					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904625	NES15950354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84247209 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Gm67871	predicted gene, 67871	within coordinates
Rr633022	regulatory region 633022	993 bp distal
Rr633023	regulatory region 633023	325 bp proximal
Rr633024	regulatory region 633024	911 bp proximal