rs47118377 SNP Detail

Summary

• ID
  rs47118377
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ATGAGCAGAG TATTTCATTG GAGAGGAGAA GAAAATTCCC
  CTCCAGGCAG AATGCATAGG CGAGTGGGCG TTGCACCTCC CCCATTGAGA GAACTTCTTG
  C
  TTTCTTTCAT GCTCCAGCCT ACTGTGTTTC CTTTCTAATC TCTCTTTTTA TTTTTCAAAA
  ACACTTTCTC CTTCTAAGAG TTTTAGAATG ACTTCTACAC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss136016056	ENSMUSSNP3893500	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47118377					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324639 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1785 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	1004 bp upstream
Rr586457	regulatory region 586457	within coordinates
Rr586458	regulatory region 586458	1234 bp proximal
Rr586459	regulatory region 586459	1735 bp proximal
Tssr32216	transcription start site region 32216	693 bp downstream
Tssr32217	transcription start site region 32217	655 bp downstream
Tssr32218	transcription start site region 32218	601 bp downstream
Tssr32219	transcription start site region 32219	564 bp downstream
Tssr32220	transcription start site region 32220	550 bp downstream
Tssr32221	transcription start site region 32221	532 bp downstream
Tssr32222	transcription start site region 32222	476 bp downstream
Tssr32223	transcription start site region 32223	419 bp downstream
Tssr32224	transcription start site region 32224	365 bp downstream
Tssr32225	transcription start site region 32225	27 bp downstream
Tssr32226	transcription start site region 32226	4 bp upstream
Tssr32227	transcription start site region 32227	1718 bp upstream
Tssr32228	transcription start site region 32228	1769 bp upstream
Tssr32229	transcription start site region 32229	1808 bp upstream
Tssr32230	transcription start site region 32230	1844 bp upstream
Tssr32231	transcription start site region 32231	1861 bp upstream
Tssr35947	transcription start site region 35947	297 bp downstream