rs47114615 SNP Detail

Summary

• ID
  rs47114615
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108803642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCATTATT AGCAGGGCCT ACTACTACAA GTTTTTGTTT
  GTTGGGTTTT TGTTTTGTTT TTGTAAGTGT ATGAGAGAGT TTGTGGTAAG TATTGTTCAT
  K
  TCTTAAAATG GGGAATATTT TGCAGCAGGG GAAACAGTGC AGGAACTAAC TTAACAAGGT
  TACAGTTACA AGGCAGGATT CTGACTAGAT TCTCAGCTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133510049	ENSMUSSNP5763613	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47114615					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108803642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17816	CpG island 17816	1551 bp proximal
Edem1	ER degradation enhancer, mannosidase alpha-like 1	Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417	within coordinates
Rr399821	regulatory region 399821	1298 bp downstream
Rr399822	regulatory region 399822	802 bp upstream
Rr399823	regulatory region 399823	1655 bp upstream
Rr636211	regulatory region 636211	1114 bp distal
Rr636212	regulatory region 636212	within coordinates
Rr636213	regulatory region 636213	626 bp proximal
Rr636214	regulatory region 636214	1663 bp proximal
Tssr58099	transcription start site region 58099	1827 bp upstream
Tssr58100	transcription start site region 58100	1845 bp upstream
Tssr58101	transcription start site region 58101	1868 bp upstream
Tssr58102	transcription start site region 58102	1881 bp upstream
Tssr58103	transcription start site region 58103	1914 bp upstream
Tssr58104	transcription start site region 58104	1924 bp upstream
Tssr58105	transcription start site region 58105	1952 bp upstream
Tssr62395	transcription start site region 62395	1700 bp downstream