rs47068530 SNP Detail

Summary

• ID
  rs47068530
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52163921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCACATAC CTTAGGGGAA
  GTTCTAGGAG AGCTACATCC TCAACTCCGA TAGATGCCTG GGTGATGGAG AAGTCACGGG
  AGCAGTCCCA TCCCTGCTGG ATATTAGTGC GCTGTCCTGA CGTCACAAGA GCCTGCACAG
  ACCCCGTTCT ACCTGACTTT AAATTAAATG CATCATGTTT TTGTTGTTGT TATACAATTT
  M
  TTTAGCTGCT TTTTCACGTG TCTTCCCCCA AATTGACGGA AACGGGAAGT GGCAGCATTA
  AATAGAGGGA GGTGAGCCAT TTCAGGAACA CAGATGTCTC TTCAGCAGGA TCCAACTCAA
  GAAAGGCCTT GGATCTTCTG AGGGTCAAAA GGAGCTTTCT GTGCCACTTG CATGATTTCT
  GCATCACAAC GTGTGTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60410299	NES15916451	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47068530					SNP	C	C	C	C	C	C	A	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410299	NES15916451	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52163921 () rs orientation: forward

Symbol	Name	Function Class
Gm30125	predicted gene, 30125	4 bp downstream
Gm38132	predicted gene, 38132	within coordinates
Gm66188	predicted gene, 66188	88 bp upstream
Rr374956	regulatory region 374956	1506 bp downstream
Rr576480	regulatory region 576480	1939 bp distal
Rr576482	regulatory region 576482	1101 bp proximal
Rr576483	regulatory region 576483	1332 bp proximal