rs47054848 SNP Detail

Summary

• ID
  rs47054848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148216098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG TCCTGCCGAC CCTGGGAGTC
  Y
  GGGAATGTTG GGTTACGGGT CCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147994015	ENSMUSSNP793690	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321417535	CHEV_4_147505750	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47054848					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148216098 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15291	CpG island 15291			within coordinates
Draxin	dorsal inhibitory axon guidance protein			943 bp upstream
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr604596	regulatory region 604596			954 bp distal
Rr604597	regulatory region 604597			1533 bp distal
Rr604598	regulatory region 604598			716 bp distal
Rr604599	regulatory region 604599			within coordinates
Tssr1378	transcription start site region 1378			778 bp downstream
Tssr40251	transcription start site region 40251			869 bp downstream
Tssr40252	transcription start site region 40252			811 bp downstream
Tssr40253	transcription start site region 40253			746 bp downstream
Tssr44585	transcription start site region 44585			992 bp upstream
Tssr44586	transcription start site region 44586			969 bp upstream
Tssr44587	transcription start site region 44587			935 bp upstream