rs47046640 SNP Detail

Summary

• ID
  rs47046640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64654723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTACCATA GCACTGCTAC
  CCTTTGCTCC TGGCTGCAAG GGCATGGGGG TGCGGGGGGG GGGGACTGCT CCCCATGCTC
  CACTAAGTAA GCTTTGGGAC CCAGTATGGC TTTCTTGCCT GCCAGAGGAG CTTCCTATAG
  GGATCCTTTC TTGCAGTTTG TCTACCCCGA ACATGTGTTT TTAGTGTCCA GGTTAGAGCA
  Y
  GTGTGTGCCA CCCAGGACCT TGATAGCCCT TGGAGGACCT TTCTGCCCTT GACAGAGAAT
  GGGAAAATTC TTAATTATTG CTTGTCCAGG GTCAATTCCT GTGAGAAATT TTTATCCCTT
  CATCTGCTAC ACCTGCTTAA TGAATTCCCA AATTCCGTCT TAAAATGGAA GATGCTAGGT
  TTCAGAACGC TGGGGCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss61173100	NES16687317	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs47046640					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173100	NES16687317	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64654723 () rs orientation: forward

Symbol	Name	Function Class
Gm43838	predicted gene 43838	within coordinates
Gm52815	predicted gene, 52815	within coordinates
Rr367845	regulatory region 367845	226 bp downstream
Rr612035	regulatory region 612035	within coordinates
Rr612036	regulatory region 612036	881 bp proximal
Rr612037	regulatory region 612037	1803 bp proximal