rs47045423 SNP Detail

Summary

• ID
  rs47045423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58883321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACATTGCC AGAGAGCCAG
  ATGTTGGTCG GGAAAGATCT CAGGAAAGCG GTGAGAGCTG AGGCTCTCGG GTTCTTGGGA
  GCTGCTTTCC TGCTGAACTC GTTCTTGTCC TCAGACCTAA GTCTTATCAC AGATTCCCAA
  CCGCACAATT CTAGCCAAAC TTAAGTGAAT TAAAACTGTC TTCTGCAGGG TCAGCCAGTG
  Y
  ATTTAACCTC TAAGGCATTG GTTCTCAACC TTCGTAATGT CCTTTAGTAT AGCTCCTCAT
  GTTGTGGTGA CCCCCCCCCC CACACACACA CCATAAAATT ATTTCACTGC TACTTCATAA
  CTAACTTTGC TTCTGTTATG AATAGTGATG TAAATGTCTG ATATGCAGCT CACAGGTTGA
  GAATCACAGC TCTAGGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132220967	ENSMUSSNP4720052	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss323695528	CHEV_11_58805997	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47045423					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58883321 () rs orientation: forward

Symbol	Name	Function Class
Gm73767	predicted gene, 73767	696 bp upstream
Gm74293	predicted gene, 74293	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	1761 bp downstream
Trim11	tripartite motif-containing 11	1037 bp downstream
Tssr108185	transcription start site region 108185	730 bp upstream