rs47026875 SNP Detail

Summary

• ID
  rs47026875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79051695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGTTAGA CACAGAAATA
  TGTTTCTCAC AAATAGCAGT TGTTGCCTGT GGGATTTCAG CAAGACAATC GCACAGCTGA
  CTCATGGGAC CAATTACAAA GGAGCAGTAA TCTTTCCTGT GGCACTAAAA CAATACAGTG
  TGCTTTCACC ACCAATTAAC AAATGTTAAG GAGTCAGAAG TGTACCACCG ATGGTTTCAT
  Y
  GCCAAATCAA TAGCCAGAGC CCCCACCCTC CCACCCACCT CCACGTGCAT TCCTTGCCAG
  ATTCCCATGG GCCAGAACCT CTTATAATGA TTCACTAAAT TCAACCAAAA CTGGTTTCTC
  AAACTGCTTG GGCATTTACT GAAAACTATA TTATTTTCTA ATGACAAAAA AAAATAATAA
  TTAGCTGTCT AGTATTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60421101	NES15922955	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47026875					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421101	NES15922955	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79051695 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr578466	regulatory region 578466			within coordinates
Rr578467	regulatory region 578467			579 bp proximal
Rr578468	regulatory region 578468			1477 bp proximal
Tssr33630	transcription start site region 33630			1422 bp upstream
Tssr33631	transcription start site region 33631			18 bp downstream
Tssr33632	transcription start site region 33632			1524 bp downstream