rs47011117 SNP Detail

Summary

• ID
  rs47011117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84208059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAGTCA TACTTAGAGC
  TTAGAAACAC ACACACACAC ATAGCTCTGA GCATACATTA GGTAAAAGCA GGGTCTGCCC
  ACATGTGGCC TTACCCTTCT GACCTTGCCT GGCCCTAAAG AGACGTGAGT GCCCATGGCT
  GCCTAGTGCT CCCGCTCTTC AGCCGACAAC CCAACCCCTA AGGTGGCCTG CTGCTGAGAC
  R
  CATGAGGACC CTCATGCTTG GCATCTCAGG TGGCAGCAGT GAGTGGGGGC ATGGGGAGGT
  GATGCAGACC CCATGTCCTC TCCTGTCACA TGGTGATTGA TTCTGGGCTG AGTTGGTTTG
  GGTGAACACG TGGCTCTGAG AGCTGGCTGG AGTTCACTTA GAAATGGGGA GCAGATGCCG
  AGGGAGGCCT GTCCATCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60904838	NES15950962	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47011117					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904838	NES15950962	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84208059 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Rr633014	regulatory region 633014	616 bp distal
Rr633015	regulatory region 633015	within coordinates
Rr633016	regulatory region 633016	99 bp proximal