rs46957943 SNP Detail

Summary

• ID
  rs46957943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138921220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAGG GAGAGAAGGG CGGCATCTGT
  R
  TGCCCGGAAG GCAGAACAGG GCATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147667637	ENSMUSSNP3557974	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321380210	CHEV_4_138749824	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46957943					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138921220 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530077C14Rik	RIKEN cDNA 9530077C14 gene			259 bp upstream
Capzb	capping actin protein of muscle Z-line subunit beta			Intron
				Noncoding-Transcript-Variant
Cpgi15162	CpG island 15162			within coordinates
Rr377279	regulatory region 377279			within coordinates
Rr603133	regulatory region 603133			1203 bp distal
Rr603134	regulatory region 603134			975 bp distal
Rr603135	regulatory region 603135			813 bp distal
Rr603136	regulatory region 603136			within coordinates
Tssr39900	transcription start site region 39900			968 bp downstream
Tssr39901	transcription start site region 39901			949 bp downstream
Tssr39902	transcription start site region 39902			915 bp downstream
Tssr39903	transcription start site region 39903			657 bp downstream
Tssr39904	transcription start site region 39904			623 bp downstream
Tssr39905	transcription start site region 39905			579 bp downstream
Tssr39906	transcription start site region 39906			177 bp upstream
Tssr44214	transcription start site region 44214			1441 bp upstream
Tssr44215	transcription start site region 44215			1272 bp upstream
Tssr44216	transcription start site region 44216			1251 bp upstream
Tssr44217	transcription start site region 44217			1191 bp upstream
Tssr44218	transcription start site region 44218			87 bp downstream