rs46875100 SNP Detail

Summary

• ID
  rs46875100
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41116940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCTCCTC AGCAGGACAG
  GTCTGATTCT TAAAGCCTCA TTTCTTCTTA GAAGATTCGG GGATAGGTGT GAGGCCAGTA
  TCTATCTACT AATACATTTA CTTATCTACC TGTAACCAGC AGAAAGTCCT GGACCCACAA
  AACAATTCTT TGTGCATAAA GGCAAATAAA ATCGCACAAG ATTTTATGAA AGTGTCTCTG
  S
  GTAGATCTGT CAGTTAGGGC TCTGTGCTCT CATCCAGATG TGGAGGGCCC TTGCAAACAA
  CAGGGCTGCC GGAGGAACAG TATAAATGAG GCAAGGAGAA AATCCAGCTC AGTGTGACTC
  CATAGAGGAA TTGATTCAAA CCTCTAGAGT CTGTGTGCTG ATTTGAATGA AAATGGTCCC
  ATAGATACCT CAGGAATGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60399301	NES15900084	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46875100					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399301	NES15900084	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41116940 () rs orientation: forward

Symbol	Name	Function Class
Gm40038	predicted gene, 40038	within coordinates
Gm64942	predicted gene, 64942	within coordinates
Rr575903	regulatory region 575903	1650 bp distal
Rr575904	regulatory region 575904	1218 bp proximal