rs46842885 SNP Detail

Summary

• ID
  rs46842885
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123178812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGGAAAC CTAGTCCTAA
  TGTACTAGTG AACGTAACAC CTCCTGTCTC TAATAAATTA CCAAGTAAGG ATTCAAACGT
  TTGGTTGAAG GTAGACTGTG TTCTAAGTGC AGAATCTAAA ATTTGCTCTA ACTTAGGTGG
  CTTCCAATGA GTCTTTCGAC AGGATCTCAA GAAAATAATC AAACTTCCTT CAAAACCAAT
  M
  TCAAGAAAAG ATTAAGAACA TGCACTGCTC TTCCAAAGGA CCTGAGTTCA AGTCCCAAGC
  ACCCACACCA GGAGGCTCAC AACTACCTGT AGTTCCAGCT CCAGAAAGAT CCAACACCTC
  TGGCGCTGTG CTCACGTGCA CATATATATA TACACACAGA GAGACAAACC CCACATAATT
  TAAAATAAAA ACTAATCTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135764320	ENSMUSSNP5859469	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46842885					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123178812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	563 bp proximal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	Intron
Rr397990	regulatory region 397990	589 bp upstream
Rr584510	regulatory region 584510	21 bp proximal
Rr584511	regulatory region 584511	758 bp proximal
Tssr35499	transcription start site region 35499	505 bp downstream
Tssr35500	transcription start site region 35500	762 bp downstream
Tssr35501	transcription start site region 35501	831 bp downstream