rs46781819 SNP Detail

Summary

• ID
  rs46781819
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103669742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT ATGTAAACTA ATGAGCCTTG
  W
  GTTCTGCATT TTTTGTACCC TTAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147139682	ENSMUSSNP588151	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss320442880	CHEV_2_103679554	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46781819					SNP	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103669742 () rs orientation: forward

Symbol	Name	Function Class
Gm13875	predicted gene 13875	162 bp downstream
Gm13877	predicted gene 13877	1880 bp upstream
Gm56363	predicted gene, 56363	193 bp downstream
Gm75184	predicted gene, 75184	within coordinates
Rr561946	regulatory region 561946	697 bp distal
Tssr19174	transcription start site region 19174	469 bp downstream