rs46754202 SNP Detail

Summary

• ID
  rs46754202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90518611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTTCCTA GTAGAGCCAG
  GGTGCAGGGA CCAAACTGGG AGGAGGACAT CTGGTGCCAG GCCAGGTTTT AGGGTAGGGG
  GCATGCTGGG TTCTCAGTTC CAGTATACTG ATCTTACAGA GAGTGGTGAT GTCTGGATCC
  TTTACCAGCT TGGCCTTACA GTGCAAGCAG GATAAGTCTA GGACTTAGCT CAGGATGATG
  Y
  TCAGGGCCAC ATAGCCAGAC CTCAAGCTGT TTTCAGTAGG AATTGGTATG AATTACAGAT
  TATTATTTCT TTGGATGGGA AGATGTCCCA GGAGCAAAGG CTAGACTAAG CCTTCCTACT
  GTAATTCATT TGGAATATGG TCCTGTGGTA AAGGTGTGGG CTGGGGCTGG GCTGCTGAGT
  AGTCTCCTCC TCTTGGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424288	NES15923527	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46754202					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424288	NES15923527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90518611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13468	CpG island 13468	1682 bp proximal
D3Nds7	DNA segment, Chr 3, Nuffield Department of Surgery 3	1540 bp distal
Gm57853	predicted gene, 57853	1880 bp upstream
Rr580415	regulatory region 580415	1693 bp distal
Rr580416	regulatory region 580416	816 bp proximal
Rr580417	regulatory region 580417	1373 bp proximal
Rr580418	regulatory region 580418	1484 bp proximal
S100a5	S100 calcium binding protein A5	Intron
S100a6	S100 calcium binding protein A6 (calcyclin)	1578 bp upstream
Tssr30241	transcription start site region 30241	1909 bp downstream
Tssr30242	transcription start site region 30242	968 bp upstream
Tssr30243	transcription start site region 30243	1528 bp upstream
Tssr30244	transcription start site region 30244	1565 bp upstream
Tssr30245	transcription start site region 30245	1596 bp upstream
Tssr30246	transcription start site region 30246	1842 bp upstream
Tssr30247	transcription start site region 30247	1872 bp upstream
Tssr30248	transcription start site region 30248	1978 bp upstream