rs46722731 SNP Detail

Summary

• ID
  rs46722731
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148214653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAT GGTGATAGAC GAGTCCTCGA
  W
  CTGAGATACC ACCCAGAGTT AGAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147993973	ENSMUSSNP6638387	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss321417527	CHEV_4_147504305	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46722731					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148214653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15291	CpG island 15291	within coordinates
Draxin	dorsal inhibitory axon guidance protein	Intron
Mad2l2	MAD2 mitotic arrest deficient-like 2	mRNA-UTR
Rr604596	regulatory region 604596	within coordinates
Rr604597	regulatory region 604597	88 bp distal
Rr604598	regulatory region 604598	492 bp proximal
Rr604599	regulatory region 604599	730 bp proximal
Tssr1378	transcription start site region 1378	637 bp upstream
Tssr40251	transcription start site region 40251	546 bp upstream
Tssr40252	transcription start site region 40252	579 bp upstream
Tssr40253	transcription start site region 40253	687 bp upstream
Tssr44585	transcription start site region 44585	442 bp downstream
Tssr44586	transcription start site region 44586	455 bp downstream
Tssr44587	transcription start site region 44587	482 bp downstream