rs46683681 SNP Detail

Summary

• ID
  rs46683681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:161804508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT TGACAGGTTC GGCCAACGCT
  Y
  TGCCTTTCTG ACAGCTGAGT TGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60335093	NES15839391	PERLEGEN	MM_PANEL2	f	SNP	C	C		C	C	C	T	C
ss145926304	ENSMUSSNP4095489	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46683681					SNP	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60335093	NES15839391	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161804508 () rs orientation: forward

Symbol	Name	Function Class
4930558K02Rik	RIKEN cDNA 4930558K02 gene	Intron
Gm38304	predicted gene, 38304	within coordinates
Rr396470	regulatory region 396470	195 bp downstream
Rr421879	regulatory region 421879	within coordinates
Rr421880	regulatory region 421880	384 bp distal
Rr421881	regulatory region 421881	318 bp distal