rs46647624 SNP Detail

Summary

• ID
  rs46647624
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78957120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGATCTCA GACATGTTAT GTAGCAAAGG CTGGCTCAAA
  CGCAAGATCT TCCTGCCCCA GGACTTTCAT GCTGGTCTAC AGGTGTGCAC CATCACCTGT
  S
  TGGCCCTCCT TCAGCCCAGT CAGTCAGCCA TCAGGGAGGG AAGGGATGGC TCACCCCACA
  GTACTGCTGA GCTGTGCATT CCACAGTGTT AAACAGATTC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
ss61654159	NES17605634	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
rs46647624					SNP	G	G	C	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61654159	NES17605634	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78957120 () rs orientation: forward

Symbol	Name	Function Class
Gm46359	predicted gene, 46359	629 bp upstream
Gm56547	predicted gene, 56547	580 bp upstream
Rr387474	regulatory region 387474	within coordinates
Rr468489	regulatory region 468489	within coordinates
Rr468490	regulatory region 468490	1096 bp proximal
Rr468491	regulatory region 468491	1645 bp proximal
Tssr114072	transcription start site region 114072	1584 bp upstream
Tssr116800	transcription start site region 116800	1959 bp upstream