rs46630507 SNP Detail

Summary

• ID
  rs46630507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123178531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGATTTTT AAGTAAAACA ACTTGTAGTA TGTATTCCCT
  GCATGAATGG TCTACTAAAC GGCAAGCACT CACATCTTCA TTCACTAGCT TCAATGAAAG
  Y
  GAAAGGTTTG AAAAGTAATC TCTAGAGAGA GGAATCTTAG AGAATTCTCT GGTGAGGGCT
  GGCTAGGGAA AAACGTTAAA ATTTGGAAAC CTAGTCCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135764308	ENSMUSSNP6247742	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320919472	CHEV_3_123087800	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46630507					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123178531 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	844 bp proximal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	Intron
Rr397990	regulatory region 397990	870 bp upstream
Rr584510	regulatory region 584510	302 bp proximal
Rr584511	regulatory region 584511	1039 bp proximal
Tssr35499	transcription start site region 35499	786 bp downstream
Tssr35500	transcription start site region 35500	1043 bp downstream
Tssr35501	transcription start site region 35501	1112 bp downstream