rs46617619 SNP Detail

Summary

• ID
  rs46617619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90518538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTGATTG CAATGGAGGG
  AAAGCAGGGT CTACAAATTT GCATCTCCTT GTTTTACCCT AAGGCTCTGT CTTCAACTTC
  CTAGTAGAGC CAGGGTGCAG GGACCAAACT GGGAGGAGGA CATCTGGTGC CAGGCCAGGT
  TTTAGGGTAG GGGGCATGCT GGGTTCTCAG TTCCAGTATA CTGATCTTAC AGAGAGTGGT
  R
  ATGTCTGGAT CCTTTACCAG CTTGGCCTTA CAGTGCAAGC AGGATAAGTC TAGGACTTAG
  CTCAGGATGA TGCTCAGGGC CACATAGCCA GACCTCAAGC TGTTTTCAGT AGGAATTGGT
  ATGAATTACA GATTATTATT TCTTTGGATG GGAAGATGTC CCAGGAGCAA AGGCTAGACT
  AAGCCTTCCT ACTGTAATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424289	NES15923525	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46617619					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424289	NES15923525	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90518538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13468	CpG island 13468	1755 bp proximal
D3Nds7	DNA segment, Chr 3, Nuffield Department of Surgery 3	1467 bp distal
Gm57853	predicted gene, 57853	1953 bp upstream
Rr580415	regulatory region 580415	1620 bp distal
Rr580416	regulatory region 580416	889 bp proximal
Rr580417	regulatory region 580417	1446 bp proximal
Rr580418	regulatory region 580418	1557 bp proximal
S100a5	S100 calcium binding protein A5	Intron
S100a6	S100 calcium binding protein A6 (calcyclin)	1651 bp upstream
Tssr30241	transcription start site region 30241	1836 bp downstream
Tssr30242	transcription start site region 30242	1041 bp upstream
Tssr30243	transcription start site region 30243	1601 bp upstream
Tssr30244	transcription start site region 30244	1638 bp upstream
Tssr30245	transcription start site region 30245	1669 bp upstream
Tssr30246	transcription start site region 30246	1915 bp upstream
Tssr30247	transcription start site region 30247	1945 bp upstream