rs46612874 SNP Detail

Summary

• ID
  rs46612874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132441969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCTAGTT CTAGGGGATC
  TGACCCCCTC TTCTGGTCTC CAGGGGACCA GGCACATATG TGGTTCACAG ATATACATAC
  AGGTAAAACA CTCATACACA TAAAATGAGA TAATTTTTTA AAAAGTAGTT TTACCTTAAA
  AGAGTTTTCC TACATTTTAA AATGACCTAA ATAGAAAACA ATTACCACAC ACACATATAT
  R
  TGTGTGTGTG TATATATATA TATATATTTT TTTTTTTTCT AGGCAAGCAG CCTACCGATT
  GAGCCACATC CCTAAACTTC TATGTGTTTT TAGGCAGGAA GACTGAAAGA AAAGAACTTT
  CCCTCTTTCT ACCTCTACAG CATACCTGAC AATTACATCA TCCCAAACCA GGAAGAAAAC
  ATGGGGATGT TGCCCATAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147621234	ENSMUSSNP2824974	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46612874					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132441969 () rs orientation: forward

Symbol	Name	Function Class
AU019990	expressed sequence AU019990	within coordinates
Gm75202	predicted gene, 75202	within coordinates
Rr565498	regulatory region 565498	1844 bp distal
Rr565499	regulatory region 565499	1601 bp distal
Rr565500	regulatory region 565500	506 bp distal
Rr565501	regulatory region 565501	140 bp proximal
Rr565502	regulatory region 565502	1803 bp proximal
Tssr663	transcription start site region 663	524 bp downstream
Tssr20313	transcription start site region 20313	587 bp downstream
Tssr26480	transcription start site region 26480	1119 bp downstream