rs46557814 SNP Detail

Summary

• ID
  rs46557814
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121078230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCAGTCTG ATTAACCCAA CAATAGACAT TTGTGGATGG
  GAAGTCCAAG AATTTAGTAG TTGCTCAGTC CCACGAGGCT GGGTGGGACT TCTGCATAAA
  M
  AGCAGGAATT CTGTATAAAC AGCATTTTTA GTTACCCTGC TCCTGGTGAG GGTGCTGGTT
  ATTATTCTGG ACCTTCTTTC TTCAGCTCTT CCACTTGGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135717528	ENSMUSSNP2814295	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46557814					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121078230 () rs orientation: forward

Symbol	Name	Function Class
Rr584034	regulatory region 584034	713 bp proximal
Rr584035	regulatory region 584035	1897 bp proximal
Tlcd4	TLC domain containing 4	1474 bp upstream
Tssr35409	transcription start site region 35409	1551 bp upstream
Tssr35410	transcription start site region 35410	1523 bp upstream
Tssr35411	transcription start site region 35411	1478 bp upstream