rs46551150 SNP Detail

Summary

• ID
  rs46551150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177970687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TAAAGTCTTT TTCCGCAAAA TGTGTTGGTC ATCCTTGGAT
  CAGTTCAGTG GTGTGACTCT TAAGCTTGTC CCTCGCTGTG TGTTGCACAC TCTACTTGCC
  Y
  GAGTGTTCTT TGTTTGTGAT CATCTTTTTA AAAGTTGTAA CAGCACCAAG ACTGACCTGG
  TTCTATCAGA GAGGCCAGAG AATCTTGATT TGAACATGCA A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148365095	ENSMUSSNP949309	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46551150					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177970687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12873	CpG island 12873	1286 bp distal
Phactr3	phosphatase and actin regulator 3	Intron
Rr572391	regulatory region 572391	1092 bp distal
Rr572392	regulatory region 572392	613 bp proximal
Tssr22174	transcription start site region 22174	1360 bp downstream
Tssr22175	transcription start site region 22175	1327 bp downstream
Tssr22176	transcription start site region 22176	1281 bp downstream
Tssr22177	transcription start site region 22177	1211 bp downstream