rs46491936 SNP Detail

Summary

• ID
  rs46491936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58943867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTC TTGAAAACTT CGCCACCATT
  R
  GTATTTTGAG CCATATAATT CTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146397937	ENSMUSSNP3682456	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss321139696	CHEV_4_58956739	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46491936					SNP	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58943867 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14341	CpG island 14341			within coordinates
Rr592951	regulatory region 592951			229 bp distal
Rr592952	regulatory region 592952			within coordinates
Tssr37403	transcription start site region 37403			229 bp downstream
Zkscan16	zinc finger with KRAB and SCAN domains 16			Intron
				mRNA-UTR
				Splice-Site