rs46442809 SNP Detail

Summary

• ID
  rs46442809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28319505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA TTCAGAACCA GTGAGTAGCT
  R
  AGTGTGGGGG TTGGGAGCAG AGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134712145	ENSMUSSNP4616859	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320690654	CHEV_3_28164278	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46442809					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28319505 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13025	CpG island 13025			1333 bp distal
Gm54170	predicted gene, 54170			within coordinates
Gm56802	predicted gene, 56802			111 bp upstream
Rr574555	regulatory region 574555			1703 bp distal
Rr574556	regulatory region 574556			1152 bp distal
Rr574557	regulatory region 574557			171 bp distal
Rr574558	regulatory region 574558			within coordinates
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant
Tssr28645	transcription start site region 28645			1970 bp downstream
Tssr28646	transcription start site region 28646			1943 bp downstream
Tssr28647	transcription start site region 28647			1928 bp downstream
Tssr28648	transcription start site region 28648			1919 bp downstream
Tssr28649	transcription start site region 28649			1779 bp downstream
Tssr32865	transcription start site region 32865			1107 bp upstream
Tssr32866	transcription start site region 32866			109 bp upstream