rs46437751 SNP Detail

Summary

• ID
  rs46437751
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138919665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG CAGGGATCCT TATGGCTTAT
  Y
  CACTTGTCAT CTTTTGGTAC CTAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147667620	ENSMUSSNP1148713	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321380209	CHEV_4_138748269	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46437751					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138919665 () rs orientation: forward

Symbol	Name	Function Class
9530077C14Rik	RIKEN cDNA 9530077C14 gene	within coordinates
Capzb	capping actin protein of muscle Z-line subunit beta	545 bp upstream
Cpgi15162	CpG island 15162	within coordinates
Rr377279	regulatory region 377279	within coordinates
Rr603133	regulatory region 603133	within coordinates
Rr603134	regulatory region 603134	353 bp proximal
Rr603135	regulatory region 603135	581 bp proximal
Rr603136	regulatory region 603136	743 bp proximal
Tssr39900	transcription start site region 39900	563 bp upstream
Tssr39901	transcription start site region 39901	588 bp upstream
Tssr39902	transcription start site region 39902	612 bp upstream
Tssr39903	transcription start site region 39903	880 bp upstream
Tssr39904	transcription start site region 39904	925 bp upstream
Tssr39905	transcription start site region 39905	955 bp upstream
Tssr39906	transcription start site region 39906	1732 bp upstream
Tssr44214	transcription start site region 44214	101 bp downstream
Tssr44215	transcription start site region 44215	260 bp downstream
Tssr44216	transcription start site region 44216	287 bp downstream
Tssr44217	transcription start site region 44217	310 bp downstream
Tssr44218	transcription start site region 44218	1642 bp downstream