rs46431399 SNP Detail

Summary

• ID
  rs46431399
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TCCCGGGTTA CTACAGGGTC TATGTCACAG TGCCTGTGAG
  AGAGGACAGA GCACTCTGCA GCCAGCCTCA GAGGCAAAGC TGACCAGCAT TGAAAAGCTG
  M
  TTCTTCTTCT TCTCTAAAGG ATTTCTCTTC AGGTAAGACA GAGGCAGGGG TGGAAAACTG
  TTTAGCAGAC TGCTGGTTTA CCCTAACCAG AGGAGGCTGA A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136016134	ENSMUSSNP4848772	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46431399					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326537 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	mRNA-UTR
Gbp2b	guanylate binding protein 2b	1597 bp downstream
Gm54185	predicted gene, 54185	1494 bp upstream
Rr398088	regulatory region 398088	593 bp downstream
Rr586457	regulatory region 586457	1800 bp distal
Rr586458	regulatory region 586458	164 bp distal
Rr586459	regulatory region 586459	within coordinates
Tssr32225	transcription start site region 32225	1925 bp downstream
Tssr32226	transcription start site region 32226	1885 bp downstream
Tssr32227	transcription start site region 32227	149 bp downstream
Tssr32228	transcription start site region 32228	111 bp downstream
Tssr32229	transcription start site region 32229	72 bp downstream
Tssr32230	transcription start site region 32230	43 bp downstream
Tssr32231	transcription start site region 32231	26 bp downstream
Tssr32232	transcription start site region 32232	497 bp upstream
Tssr35947	transcription start site region 35947	1595 bp upstream