rs46426085 SNP Detail

Summary

• ID
  rs46426085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138121967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG TCATTACTCC TAACCTAGAC
  Y
  GGGTCGTGGG TACAACCCCC CCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147644476	ENSMUSSNP3540784	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321373121	CHEV_4_137950571	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46426085					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138121967 () rs orientation: forward

Symbol	Name	Function Class
AB041806	hypothetical protein, MNCb-2457	542 bp upstream
Cpgi15151	CpG island 15151	within coordinates
Fam43b	family with sequence similarity 43, member B	mRNA-UTR
Rr602906	regulatory region 602906	157 bp proximal
Rr602907	regulatory region 602907	730 bp proximal
Rr602908	regulatory region 602908	757 bp proximal
Rr602909	regulatory region 602909	1862 bp proximal
Tssr44164	transcription start site region 44164	1731 bp downstream
Tssr44165	transcription start site region 44165	1782 bp downstream