rs46400656 SNP Detail

Summary

• ID
  rs46400656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152336672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGAAAGG TCTGAGCTCC CCTTTCACCC
  GAGTGTAATT CAGAGAGACC GTGGGACAGA GATAAATGAT CAAGAACCCG CTTTTCCAGC
  AAGCACATGG ATCTTAattg gagctactgt accaatgtat cttagattac atcatctgta
  R
  gcgaaggact tggctttgga gcctgggaag tacaagatca agttgctggt agagctggtg
  tcagataagg gctccacctc tgcctcacag ttggtagctt gttgctgctc cctcaaatag
  caggaGGAGC CCATAAGGCT TGCCCACCCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145731314	ENSMUSSNP6598298	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss320065957	CHEV_1_154308051	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46400656					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152336672 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420464	regulatory region 420464			1593 bp distal
Rr420465	regulatory region 420465			858 bp proximal
Rr420466	regulatory region 420466			1506 bp proximal