rs46391222 SNP Detail

Summary

• ID
  rs46391222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94235665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCTCAGC AAACCACCAA
  CAGCAATCAA AAGATGAAAA CAGGGATGGT GCAGGATTTC CAATCTTACG TTGGAAAGGC
  AGCCTTACTG TATTTTTCTA GGGGTTCTGA CATTTTTAAA CTCTCAGTTG GAGGCTAATG
  AAAATTAACT TGGATCTTGA ACTTAATATC CATGAAAAAG AAATCCTTTA AATCGGGAGT
  Y
  TGATATAAAT ACACTCGAGG AAAGAGTACA CTGGAAACAC AAAGTGTGGG CATTTTAAAA
  ATTTTGTTTA GGTTTGCTGC ATTGTGAAAT GTCTCATCTT AAATATAAAC CATGCGATGT
  GTTTCTACAG TTAATCAAAA GGATCAGTTT CTCTCTCTCG CCTTTGGTTA AAACATGAGT
  CAGTATGCTT AAATTGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146954212	ENSMUSSNP6054068	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320397645	CHEV_2_94245477	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46391222					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94235665 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2810002D19Rik	RIKEN cDNA 2810002D19 gene			1387 bp upstream
Cpgi11962	CpG island 11962			694 bp proximal
Rr561373	regulatory region 561373			341 bp proximal
Rr561374	regulatory region 561374			812 bp proximal
Rr561375	regulatory region 561375			1157 bp proximal
Rr561376	regulatory region 561376			1349 bp proximal
Rr561377	regulatory region 561377			1382 bp proximal
Rr561378	regulatory region 561378			1436 bp proximal
Tssr19003	transcription start site region 19003			1399 bp upstream
Tssr19004	transcription start site region 19004			1443 bp upstream
Tssr25328	transcription start site region 25328			318 bp upstream
Tssr25329	transcription start site region 25329			1327 bp downstream
Ttc17	tetratricopeptide repeat domain 17			Intron
				mRNA-UTR