rs46379300 SNP Detail

Summary

• ID
  rs46379300
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:98304744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC TTAACATCTG TTAAACTGAT
  M
  AATGGATGGT CAGCAGCAGA GTAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61040539	NES16091011	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	C	C	C	A	A	C	A	A	C	A
ss145478277	ENSMUSSNP6938765	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46379300					SNP	A	A	A	A	A	A	C	C	C	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61040539	NES16091011	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:98304744 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930558N01Rik	RIKEN cDNA 4930558N01 gene			614 bp upstream
Emsy	EMSY, BRCA2-interacting transcriptional repressor			Intron
				Noncoding-Transcript-Variant
Rr368380	regulatory region 368380			1117 bp upstream
Rr651647	regulatory region 651647			124 bp proximal
Rr651648	regulatory region 651648			625 bp proximal
Rr651649	regulatory region 651649			785 bp proximal
Rr651650	regulatory region 651650			999 bp proximal
Rr651651	regulatory region 651651			1073 bp proximal
Rr651652	regulatory region 651652			1393 bp proximal
Tssr68028	transcription start site region 68028			280 bp upstream
Tssr68029	transcription start site region 68029			608 bp upstream
Tssr68030	transcription start site region 68030			637 bp upstream
Tssr68031	transcription start site region 68031			1364 bp upstream
Tssr73641	transcription start site region 73641			978 bp downstream
Tssr73642	transcription start site region 73642			993 bp downstream
Tssr73643	transcription start site region 73643			1255 bp downstream