rs46371782 SNP Detail

Summary

• ID
  rs46371782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14711936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTGTTA GATAACCACA
  CTGAAATATT TCTCTAGGCC TGTGCAAAAT AAATAAAGAA AAATCAATGA CGTTTCTTTT
  TCTGTGAAGC AGAGAGAAAA CCTGCCTTAT TAGATGTATT TAACTTAATT TCCTTCAGGC
  TTTCAAATTT GTGAGTCTGT TAGTAGATGT ATATGTAGTG TACAAAAGAG TTTGGAAAAG
  Y
  AGCCCAAAGC TTCTAAATAT TAAGTTGCTA CCACCCACAT TTGTTACAGG ATACTTTTAT
  AATATTTAAA CATAAAAGGT CTAATGCTAC TCACATCAAA TATTAAAGTG TTGACATTAT
  TCTTCAAAAC CATTTTCTTT ATGAATGTTA GTATTTTTAT TGGGGGAAAA ATTCTAATTT
  AATTTGTTCT GTAGTAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60371917	NES15873956	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46371782					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60371917	NES15873956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14711936 () rs orientation: forward

Symbol	Name	Function Class
Car13	carbonic anhydrase 13	Intron
Rr374549	regulatory region 374549	833 bp upstream
Rr573698	regulatory region 573698	1855 bp proximal
Tssr28415	transcription start site region 28415	1935 bp downstream