rs46371015 SNP Detail

Summary

• ID
  rs46371015
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121085439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACTTCTG AACTTTGACC GCCCAACTTG GCAAGCTCCG
  CCCAGTGCAG ACCATCCCCG CCCACAGAGA GGCGCTTTGC TCCCTGTTTG CTCTTAAGCG
  S
  GGTGCTTGCA AACTTTAACC GCTGGCGCCA GGTCTACACG CATGCGCCAT CCTTTGAATG
  CTGAGCATTC TGATTCTAGC TGCTACAGCC GCAGGGCTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135717678	ENSMUSSNP4119817	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46371015					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121085439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg14	asparagine-linked glycosylation 14			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13756	CpG island 13756			within coordinates
Gm56787	predicted gene, 56787			117 bp upstream
Rr367543	regulatory region 367543			within coordinates
Rr375663	regulatory region 375663			1513 bp downstream
Rr584038	regulatory region 584038			168 bp distal
Rr584039	regulatory region 584039			within coordinates
Rr584040	regulatory region 584040			41 bp proximal
Tssr31434	transcription start site region 31434			within coordinates
Tssr31435	transcription start site region 31435			31 bp upstream
Tssr31436	transcription start site region 31436			61 bp upstream
Tssr35412	transcription start site region 35412			176 bp upstream