rs46332190 SNP Detail

Summary

• ID
  rs46332190
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52664219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGTAAGG AGGGTGTGGT
  AGAATAAACT ATTTACCCCA TGGCTGGACT GAAAAAGCAC AAGAAGGGCA ATCGCGAGTG
  GTCAGAAGTG GTTCCCACCT TTTAAAGATT CCACTACCTC CCAAGAGCAC CATGGGTCAC
  TTTGCTAAGC CGTAGACATC CTCCGTGCCC AGGTCTGCAC CTCTATAGGA AGAGGCGGAA
  A
  TGTACCCTGC ACGTGGTTCC CACCTCTTCC CTCCTCTTCA GACCACACCT TCTTCCCTGC
  TGGGAAGCTT CTGATGATGC CCTTTTACAG TTTGGTCAGA GCCAGTTATG ATGGGCACTC
  AGTCCCAGCA CTCAGGAGAC AGGGGCAAGC CGAGGGTCTC TGACTCTGAG GCCAGCCAAC
  CTGGTTTAAG TTCCAGGACA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135178212	ENSMUSSNP592008	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46332190					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52664219 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	1396 bp distal
Rr576581	regulatory region 576581	1820 bp proximal
Rr576582	regulatory region 576582	1951 bp proximal
Tssr33262	transcription start site region 33262	1742 bp upstream