rs46262741 SNP Detail

Summary

• ID
  rs46262741
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53371897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACAAAAA GTCCTTTGAG
  ACGGTGCTGG ATGAAATTCG AAAGGTAATT GACCTTGTTC CCTGAAATTC GTCTGAGATA
  ATAATGGTCG TGAGTTACTT TCTTTGAGGT GTTGTGTGTA GTCAGCAGAG GAACTTGAAC
  TTTCCTGTGT AACGTAAGAA CTTGCATCTT GGTCCGTTGC ACCGCTTAAA TAGAAGATAA
  R
  CCACCTCACT GCTAAACTTG GGAAGTCATT GTGGTACGGG AATTACGTTT GTACTACCTA
  CAGCCCCGGA GCCAACTGTA AATCCGTAAT AACTGAGCTT TTGGTTGACT GACATTTATT
  CAATGTTAAC ATGGTTCGGT AACAGGAGTG ACTAGGCACT GGAAGGGATG CCGAGAAAGT
  TCTTTTCCAG ATCTCTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60413049	NES15907411	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46262741					SNP	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60413049	NES15907411	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53371897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13163	CpG island 13163	429 bp distal
Nhlrc3	NHL repeat containing 3	1218 bp upstream
Proser1	proline and serine rich 1	Intron
Rr374971	regulatory region 374971	within coordinates
Rr576696	regulatory region 576696	1667 bp distal
Rr576697	regulatory region 576697	800 bp distal
Rr576698	regulatory region 576698	864 bp distal
Rr576699	regulatory region 576699	within coordinates
Rr576700	regulatory region 576700	1983 bp proximal
Tssr29113	transcription start site region 29113	886 bp downstream
Tssr29114	transcription start site region 29114	795 bp downstream
Tssr29115	transcription start site region 29115	767 bp downstream
Tssr29116	transcription start site region 29116	654 bp downstream
Tssr29117	transcription start site region 29117	570 bp downstream
Tssr33269	transcription start site region 33269	1244 bp upstream
Tssr33270	transcription start site region 33270	1170 bp upstream