rs46257148 SNP Detail

Summary

• ID
  rs46257148
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCAAAAATCT GGAACTTCCC GGGTTACTAC AGGGTCTATG
  TCACAGTGCC TGTGAGAGAG GACAGAGCAC TCTGCAGCCA GCCTCAGAGG CAAAGCTGAC
  S
  AGCATTGAAA AGCTGCTTCT TCTTCTTCTC TAAAGGATTT CTCTTCAGGT AAGACAGAGG
  CAGGGGTGGA AAACTGTTTA GCAGACTGCT GGTTTACCCT A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136016125	ENSMUSSNP6893035	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46257148					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326521 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	mRNA-UTR
Gbp2b	guanylate binding protein 2b	1581 bp downstream
Gm54185	predicted gene, 54185	1478 bp upstream
Rr398088	regulatory region 398088	577 bp downstream
Rr586457	regulatory region 586457	1784 bp distal
Rr586458	regulatory region 586458	148 bp distal
Rr586459	regulatory region 586459	within coordinates
Tssr32225	transcription start site region 32225	1909 bp downstream
Tssr32226	transcription start site region 32226	1869 bp downstream
Tssr32227	transcription start site region 32227	133 bp downstream
Tssr32228	transcription start site region 32228	95 bp downstream
Tssr32229	transcription start site region 32229	56 bp downstream
Tssr32230	transcription start site region 32230	27 bp downstream
Tssr32231	transcription start site region 32231	10 bp downstream
Tssr32232	transcription start site region 32232	513 bp upstream
Tssr35947	transcription start site region 35947	1579 bp upstream