rs46235522 SNP Detail

Summary

• ID
  rs46235522
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84244975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATCCCA TGTTTCCTGA
  TACCCTGCAT CAGGAACCAA GGCCTATGTC TGCCTCTCAT TTCATTCCCA AGCCTGCCAC
  CACAGTGCTG GCTCAGGGCC CCACCACCAT TCCCTGTCAT TTCATTTCCA ACTCTTCTTC
  AGCCTCCTGA TGAAGGGTCT CTCTTTCTAA AGCAGCCTGG ACCCCACTGA GGCATAGAGC
  K
  GCTGCTGCTG CTGCATCAAG CTCCTCTCTT TCTTACTTAC TCACTAAGGC CCAAGCTGGC
  CCTCCACCAT GCTCCTTCTC AGAACCATCA TCACACCTGT GCCAATACCC AGCTTATCCT
  GAAGACTGGG TGACCCCTTC CATCTTCCCC ATGACTGTGC ACTCCTCAAG TCAGAGGCTA
  CCCTGGCTGT CCAGATGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904636	NES15950376	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46235522					SNP	G	G	G	G	G	T	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904636	NES15950376	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84244975 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Gm67871	predicted gene, 67871	within coordinates
Rr633021	regulatory region 633021	888 bp distal
Rr633022	regulatory region 633022	1220 bp proximal