rs46181295 SNP Detail

Summary

• ID
  rs46181295
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:16860829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCTGGT CCCTCCAAGA
  TGGCTTGTTT CATGAGCATG TGCTAAGCAC CTTTAGATGA CTGATGGGAG CCCCACCATC
  ATCGCCCCGG GGCACTCAGA ACCTGCAGTC CGCTGGTTGG GACTAGAGAG CGCCTGCTCC
  GATCCCCCGG AATCCCTGCT CCACCTCTTT TCTTCCCCCA ACCCATCCCA CCACACACAC
  A
  CCCACCCCCC GCCGCCGCCA TCCTCTCCAA GGATCCATCC TCCGGAACAC CCGGGCGTCG
  GCAGCGGGCG AGGACCGGTG TGCGCGGGAG ATCTAACGGA CGGCGCTGCG CATGTGCAAA
  CGCGGGTGCA CTGCGCATGC GGAAAGATGG CCGGCCAGGG AACCTGAGCG CCTCCGCGGT
  CACCCTGGTC CCCTCCGAGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137196015	ENSMUSSNP2145313	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs46181295					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16860829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4441	CpG island 4441	within coordinates
E2f6	E2F transcription factor 6	103 bp upstream
Rr463370	regulatory region 463370	within coordinates
Rr463371	regulatory region 463371	160 bp proximal
Tssr112858	transcription start site region 112858	112 bp upstream
Tssr112859	transcription start site region 112859	151 bp upstream
Tssr112860	transcription start site region 112860	1563 bp upstream