rs46122211 SNP Detail

Summary

• ID
  rs46122211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14714659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATCTGAT ATGGGTGCTG
  AGAACTGAAC TTGGTCCTCT GGAAGAGCTG CAAGTATGCT TAACTGCTGA GTCATCTCTC
  CTACCCCACC TTTATGTATT ATAAAGAAAT CTTTCTTATA TAAGGTGGAT AGGTCTTGAA
  ATTTAAGACT CTGAAGAGTA ATTTAAATAT CTGTTACTAA GTCTGTATCT CCCTTTTCTT
  R
  CACAATTCTG TGGTATGCTG GAGTTTAGTT ACTATTACGC ATATTCAGCC AGCATACAAT
  GTTTCCTTTC CATTCCTGCC TCTTCAGCAG ACAAGGGAAC TAGGCAGAAA TCGTTTAGGG
  CTCTCCTTCC TTCGCCTCCT TCCCCCTCCC TTCCTCTTCA TTCTTTCCCC TTTCTTTCCT
  CCCTCATTCC CTTCCTTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60371901	NES15873908	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		G	G		G
ss320666906	CHEV_3_14649599	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46122211					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60371901	NES15873908	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14714659 () rs orientation: forward

Symbol	Name	Function Class
Car13	carbonic anhydrase 13	Intron
Rr374549	regulatory region 374549	301 bp downstream
Rr573698	regulatory region 573698	429 bp distal
Tssr28416	transcription start site region 28416	234 bp upstream