rs46098690 SNP Detail

Summary

• ID
  rs46098690
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58942958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT GACTTCCCTG CCATGAGGAC
  T
  GTACCTTGAG CTGCGAGCTG AAATA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146397904	ENSMUSSNP4985248	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321139687	CHEV_4_58955830	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46098690					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58942958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14341	CpG island 14341	480 bp proximal
Rr592951	regulatory region 592951	180 bp proximal
Rr592952	regulatory region 592952	681 bp proximal
Tssr37403	transcription start site region 37403	617 bp upstream
Zkscan16	zinc finger with KRAB and SCAN domains 16	670 bp upstream