rs46094406 SNP Detail

Summary

• ID
  rs46094406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161617511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT TGAGAAAGAA TAAACACCCC
  Y
  GTGAACAGTC TCAAGGACCC ATCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145922261	ENSMUSSNP3182272	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320081633	CHEV_1_163720073	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46094406					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161617511 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	1447 bp upstream
Rr421846	regulatory region 421846	1271 bp distal
Rr421847	regulatory region 421847	1610 bp proximal
Tssr14586	transcription start site region 14586	1567 bp upstream
Tssr14587	transcription start site region 14587	1486 bp upstream
Tssr14588	transcription start site region 14588	1471 bp upstream
Tssr14589	transcription start site region 14589	1459 bp upstream
Tssr14590	transcription start site region 14590	1446 bp upstream
Tssr14591	transcription start site region 14591	1436 bp upstream