rs46004311 SNP Detail

Summary

• ID
  rs46004311
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16716766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGGAGGC AGGAGGATCA
  GAAGTCCAAA GTTCTGGTTA TATAGCAAAT TCAAGACCAG CCTAGGAGAC GAGATCTCAG
  GGGTAAAAAG AATGAAAGAA AGAAACTTGT AGTGATGCTC AAATTCTCTG AATTGACTCG
  TGGTACCCTT CAAGATGGCT TCTGTGTCCT TAAAGGTTTT TTCTTATTCT TTGACTGTAC
  C
  CTAGCTTTCT GAACCCAAAC GACATCGCAG GCTTACTTTG TATCTTCTTT GTCCCCCTGC
  CTGGAAACCT CTCCTTTCTC AAATGAGAAA GGTATGAGGC GCTGACCCTT CACTTCCCAG
  TGACCCCTCT TTGCCTTAGT TTCTGATTTC AAAGCAGCAG GATCTGCCAA TAGAGGAGGT
  GATGCTCTGG CGGTTGCCAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148401880	ENSMUSSNP5167808	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46004311					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16716766 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	242 bp upstream
Rr642835	regulatory region 642835	within coordinates
Tssr64666	transcription start site region 64666	224 bp upstream
Tssr64667	transcription start site region 64667	332 bp upstream